The victim, identified only as Diego in a statement from the Riverside County Sheriff's Department, was pronounced clinically dead Tuesday evening.
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MORE: Parents demand answers after middle school assault
"Preparations by Diego's family are underway for organ donation to transform this tragedy into the gift of life for other children," the news release said.
Moreno Valley parents demand answers after middle school assault leaves 13-year-old in critical condition
Two other students who were involved in the fight, which was recorded on video by a bystander, remained in custody following their earlier arrests on suspicion of assault, authorities said. Their identities were not disclosed due to their ages.
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"On behalf of the City Council, I want to extend my sincere condolences to Diego's family and friends. No one should have to endure the pain of such a terrible loss," Moreno Valley Mayor Yxstian Gutierrez said in a statement.
"This is a life-changing tragedy for everyone involved, including the staff and students at Landmark Middle School," Gutierrez said.